spatialrefinery.segmentation.to_spatialdata.geojson_to_spatialdata#
- spatialrefinery.segmentation.to_spatialdata.geojson_to_spatialdata(geojson_path, zarr_path, image_path, template_adata_path, *, write_zip=True)#
Assemble and write the SpatialData zarr for one segmented slide.
The table is all-zero counts over the template’s
var; it exists so the shapes element carries a SpatialData-valid annotation.